NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101672_1093742

Scaffold Ga0101672_1093742


Overview

Basic Information
Taxon OID3300007152 Open in IMG/M
Scaffold IDGa0101672_1093742 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.73665Long. (o)150.867667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016980Metagenome243Y
F019152Metagenome231N

Sequences

Protein IDFamilyRBSSequence
Ga0101672_10937421F016980AGGMKYTELMNQLQHLSKEKIGHETLVFIREKEKFMSLKSGLDIVTEFDEYALELETDQPYFSV*
Ga0101672_10937422F019152N/AILLECNLSEEEINTVIEALSREYVENYLEILEKDYQLQGKLSEIISTFYTKLDAQKFIQTQVKSIKGSNL*

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