Scaffold Ga0101672_1071077

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101672_1071077

Scaffold Ga0101672_1071077

Overview

Basic Information
Taxon OID	3300007152 Open in IMG/M
Scaffold ID	Ga0101672_1071077 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	595
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.73665	Long. (^o)	150.867667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048640	Metagenome	148	N
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101672_10710771	F053978	N/A	IQMQINEQTKQIIREIVVELFKEVASKQTFGVKDEVLMLDEHLHDWVGRKIDNYKVKVYGARLEERY*
Ga0101672_10710772	F048640	AGGAG	MQPKNLNAHARIKFEPTRVQKQLECRLFGKTFRSIAAAARYYELSPSTAYEWHHGGMYRETFPKTERWDRWRSNNEAV*

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