Scaffold Ga0101672_1054934

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101672_1054934

Scaffold Ga0101672_1054934

Overview

Basic Information
Taxon OID	3300007152 Open in IMG/M
Scaffold ID	Ga0101672_1054934 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	681
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.73665	Long. (^o)	150.867667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007584	Metagenome / Metatranscriptome	348	Y
F025719	Metagenome / Metatranscriptome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101672_10549342	F007584	GGAG	MAETIARMLMILIGFAIAMLGIIYAIHTQDVYLGILIATGGVVSMYAGLPQ*
Ga0101672_10549343	F025719	N/A	LKEAVYFSICYKPKKYNGKPVYRNAKWDDKCKIGNGYIIYYDRDRGGYRCASGESAISLQKGELNNG*

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