Scaffold Ga0101550_1010977

Overview

Basic Information

• Taxon OID: 3300007148
• Scaffold ID: Ga0101550_1010977
• Source Dataset Name: Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1288
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Sylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina (low pH), Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101550_10109772	F012584	N/A	MKLKPTLPENTFILNEDSLPTSADADPWGKIMVFRKDVGWSTIQQTDAVQFLAMKHTHWTFTPSYPHD*
Ga0101550_10109773	F016820	N/A	MTKKEFSYIVFSSCGDNVQEIVGVYKDLDGASYGARTALSTLFPKHGDEAKIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQTQEVS*
Ga0101550_10109774	F006793	GAG	MTNNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTKSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVARKKKKYADLDSLDNTTDSETPF*