Scaffold Ga0101550_1005038

Overview

Basic Information

• Taxon OID: 3300007148
• Scaffold ID: Ga0101550_1005038
• Source Dataset Name: Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1697
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Sylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina (low pH), Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101550_10050383	F017657	GGAGG	MMMDNNRKEALDKATKAKQKMMIAAEMMNQLQPTVPEVTAANIDMQPAIIPNPKPEGPVINPNVFNPGNLYPGISGTSKLAANWNPMMDPAAG*
Ga0101550_10050384	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAINEAQKLLTDQLKKSIPSVPDVTGDVVPTGPLPTLPKF*