Scaffold Ga0101670_1047392

Overview

Basic Information

• Taxon OID: 3300007144
• Scaffold ID: Ga0101670_1047392
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 706
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034958	Metagenome / Metatranscriptome	173	Y
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101670_10473921	F034958	AGGAG	MKSEVDQIIDNLKFCIETLGCNDEQTGDVLAATNELGVNVEYFANEFMETSSRQVHDDDYLNIALFNAMFWEF*
Ga0101670_10473923	F056679	GGAG	MKLVTKIEVYEKLDEDIQFKIDNGLGLWSSKDHQIGEDVRKYMLPYTLKRVVYENNRPHSLTSYK*