Scaffold Ga0101673_1042671

Overview

Basic Information

• Taxon OID: 3300007137
• Scaffold ID: Ga0101673_1042671
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 724
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Dobu 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.752083
  • Long. (^o): 150.854133

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101673_10426712	F079193	N/A	MKTEAVKTIFQSEDYGLEDHTLTVDKIVELDENGNAMVTKLIAYVIDPLDNAMIFNYSPYAKLSELLNSAKVWIQCGCPSDCDEMGFPRKWDEASLHAWVAG*
Ga0101673_10426713	F019151	AGGAG	MIVADERAKDGLELFEIDGLQAFEMKNETLKMCADDDGTLWDSVRGLEVKDADGNVVFSLSWSETGVCGML