Scaffold Ga0101673_1014395

Overview

Basic Information

• Taxon OID: 3300007137
• Scaffold ID: Ga0101673_1014395
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1198
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Dobu 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.752083
  • Long. (^o): 150.854133

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004842	Metagenome / Metatranscriptome	421	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101673_10143952	F004842	N/A	PPSKVAKERGNKTFDGDIFLRSHQLSIKGNKDATTGVLGTIPDIGAIKKAIKEINFLGVRILSEEINSLTLSKAPLLNNAEETANKPIRVIKEGLPNPAKAFSGERTPVDINIPTHNKPVNSGAIVFLINKIIDIIKTTTVIKASKLLLITAIKFIQNLFNSIYPKTIFQKSLIGIIIFFKKLFKN*