Scaffold Ga0102700

Basic Information
Taxon OID	3300007125 Open in IMG/M
Scaffold ID	Ga0102700_1000127 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 675950834
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007125 Open in IMG/M

Scaffold ID

Ga0102700_1000127 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 675950834

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	74256
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (28.26%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

74256

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (28.26%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102700_100012748	F072445	N/A	MATVTELVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVIAAPKIVYYPGDDIINARLNSVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDKEDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTMSAKFEHYSLEFKNL*
Ga0102700_100012751	F071326	N/A	MAENMVLKSLDLSNKFYQAALSNIKAQLEILGTKFVVLRPKENSKWKNVFGGSYSSDSTLENDYDEFTTNLIVNLNDMKDVWNRNRDSIEAFTNDGSLEVGDELQYTRNKRTYRFKISLKQGYSETGDTLYSYTLMSIIETLDM*
Ga0102700_100012770	F051210	N/A	MNNFSQIMGTPEMMSALRASSVSTEDARLRNNEYAKMFSRNAEMMDLFGMGKGSNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGTFELPITITPASGAYTPLVGRKLIPGTVRIKCDDGSGKKYELIDDGQGNFMSIAGVLKKGTINYLSGKIEFELNTPITAAGKITVVGKEDTTGTPCGTLGATNAHAADKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFRLVETLEKGYAGNAMTDLDLSNATTSLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYVAGNQAANQFQKGSVIGKFERNTKMTYINDLLGWYDGIPVLRSTDIKEAAGEGTFYTIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102700_1000127

Overview

Ecosystem & Geography

Associated Families

Sequences