NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101668_1033551

Scaffold Ga0101668_1033551


Overview

Basic Information
Taxon OID3300007114 Open in IMG/M
Scaffold IDGa0101668_1033551 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1033
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045154Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0101668_10335512F045154N/AARTVKEKNKDLQNRICHNVAPSKDFTINPPKLKLNAPKKINNGPGKFLIKVIKFVKLNFASLSHIV*

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