Scaffold Ga0101668_1031177

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101668_1031177

Scaffold Ga0101668_1031177

Overview

Basic Information
Taxon OID	3300007114 Open in IMG/M
Scaffold ID	Ga0101668_1031177 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1066
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Upa-Upasina 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.8241	Long. (^o)	150.825833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033840	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101668_10311771	F033840	N/A	MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDKQADIVRRDQIARADDLGDFNDPGQQARSDSFLAKFRQTRLLTDDEKFNVSKEGVLQYMQGDPKGPPVNGQFPTDGVK

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