Scaffold Ga0101668_1025056

Overview

Basic Information

• Taxon OID: 3300007114
• Scaffold ID: Ga0101668_1025056
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F048640	Metagenome	148	N
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101668_10250562	F004493	GAGG	METKFTKNKELGFTDNQWGQLIESNGLLIMWFIEWNNKDWHGTPDMSIQEFFTKKYNQSAGCNPWPIKGAVSLDGKFVSTHQDDEDLEPYFMIDTPDGVGYIYPYAFVALPTKAGGHVTVRMD*
Ga0101668_10250564	F053978	AGGAGG	MQINEQTKQMIRDIVVELFKEVASKQTFGVSDDVLQLDEHLHDWTGRKIDKYKVKVYGATLEERY*
Ga0101668_10250565	F048640	GAGG	MQPKELNAHARCRYEPTRVQKQLECRLFGETFHSVAAAARYYELSLSTAYEWHHDGKYRETLPKTKRWDKWRNNNEAV*