NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101668_1006830

Scaffold Ga0101668_1006830


Overview

Basic Information
Taxon OID3300007114 Open in IMG/M
Scaffold IDGa0101668_1006830 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1953
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F002490Metagenome / Metatranscriptome554Y

Sequences

Protein IDFamilyRBSSequence
Ga0101668_10068302F002490N/AMIKMEMKQIKEEIKDYVRDHYKYYGWYPYDVQVGDVLYSYEQYMDILSRTV*
Ga0101668_10068304F001419GGAGGMNYEEIMKCYEGETDAHASTSFEFGLMNDLYYQLFYSYPEVD*

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