Scaffold Ga0101666_1008764

Overview

Basic Information

• Taxon OID: 3300007113
• Scaffold ID: Ga0101666_1008764
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1623
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F007475	Metagenome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101666_10087642	F002215	N/A	MEPQVIAAIISGSIGAFAGITRALGNFSKKLDRRFENVEKNLDKLKNEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK*
Ga0101666_10087644	F007475	N/A	KEKEKRDILEAVEIFALYNRSTKWEGNKNIVGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKALNTTNRMIAMVNKLFNKSPTVLDDIKFGIVNKPLSEFTNIFEAGLLQAGDYINGELLDAAVNTSNMDAGTYNPETAQDTVVDAGLYINV*