Scaffold Ga0101666_1004874

Overview

Basic Information

• Taxon OID: 3300007113
• Scaffold ID: Ga0101666_1004874
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 2046
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101666_10048743	F006217	AGGAGG	MLEVLLAIAATQPDDNAITKYCMSKFEHWTDRAACGQQLRQIERELEVEALRKFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYGTSKERRC*
Ga0101666_10048744	F029123	AGGAG	MSYEVWFGQNGKWFGYHSFKYKMDAQRYEERYQTVFPNLTVEIREREHASV*
Ga0101666_10048745	F027536	GGAG	MRVYNYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEAKLHEEDRDERGYQWVPNF*
Ga0101666_10048746	F015102	GGA	MQEESNDTQDTNAPFDDVTHWVGNLPSKDTHSTERPVKRYSWWQTKSNILRSKLGVETKRED*