Scaffold Ga0101666_1001890

Overview

Basic Information

• Taxon OID: 3300007113
• Scaffold ID: Ga0101666_1001890
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020526	Metagenome / Metatranscriptome	223	Y
F025996	Metagenome	199	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101666_10018902	F082531	N/A	MTVNPLSELFMNDQDIEQFIKAFDDFMQHAETEIDAHQKWKEAEEYTNQFFEERAAELEVTVDYYMQEFVQ*
Ga0101666_10018905	F025996	AGGAG	MMDRKREIRIGEFDQSIIELQKRKFKLLKEVEQINFQISFLRQQQEQLINV*
Ga0101666_10018909	F020526	AGG	MTDDQRVEMIEEQCEHIITLCQTYVEGNRLEDVGNIRALYEEYGEWIDTYNGMPQSPEEYTTAWCPRLLECDG*