Scaffold Ga0101666_1000773

Overview

Basic Information

• Taxon OID: 3300007113
• Scaffold ID: Ga0101666_1000773
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 5451
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029777	Metagenome / Metatranscriptome	187	Y
F036279	Metagenome / Metatranscriptome	170	N
F085576	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101666_100077310	F085576	AGGAGG	MKQWYIRFKAGNFENGYYEIGENFDLVKDLCKSEFMKDCKALGFTPITAELTYCEENRI*
Ga0101666_100077312	F029777	GAG	VTWDHDKEMWCEVDHLMMNFYIKAKTSETRQEREDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPNCVSGNEGDITYHVTLHVQECNRTDLTIYDNSNRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101666_10007733	F036279	AGG	MEGTLHRFKLLFRIFYFVSMTACSVPFANGVNGKDIIKIANAGKNIKNITKEGINEELITETKNILKDIQYGGKAQR*