Scaffold Ga0101560_1107220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101560_1107220

Scaffold Ga0101560_1107220

Overview

Basic Information
Taxon OID	3300007112 Open in IMG/M
Scaffold ID	Ga0101560_1107220 Open in IMG/M
Source Dataset Name	Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Dobu 'control', st5dc
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	553
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'control' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.752083	Long. (^o)	150.854133	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036270	Metagenome	170	Y
F058913	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101560_11072202	F036270	GAGG	MHIESTNKQSVFKGDEDGHQLLKLIDDMGWDYDRFSSSGQETYDKICVILAKVKEDKNETN*
Ga0101560_11072203	F058913	AGGAGG	MKLTKEEARWLDDKWNAFYYYFQVEDMFENDQEILKNIGKKLSEVKQ*

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