NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101564_1015518

Scaffold Ga0101564_1015518


Overview

Basic Information
Taxon OID3300007099 Open in IMG/M
Scaffold IDGa0101564_1015518 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', stU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.752083Long. (o)150.854133Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038198Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0101564_10155182F038198N/AMTFEEVTLKNVKVTINFDIDLDTLEHYLETKEKDGNDIEAIYDMICTHFARLHEQGEPDNMRSYFDIDPETFVLLEQQVKSDLKKSYVTDSDHPHLRRIK*

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