NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102532_1163019

Scaffold Ga0102532_1163019


Overview

Basic Information
Taxon OID3300007094 Open in IMG/M
Scaffold IDGa0102532_1163019 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2423
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3991438Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005740Metagenome / Metatranscriptome391N
F088747Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0102532_11630193F005740GAGMKLIVSDIQAMIARVIGTCTDDPRVYEYINQACRRLLHKGLWAGAYGRFTIFTNNGCITWPRQIETIEAVADCCAVGTVRNQWFEFQETGFGLVNGGGQVCLGNQLLDRGTVVSYRDLSGGTNNYLRVYPGDISDVGKTITLQGTDNNGQWIRTQSGGVWIDGEKVTLALPYVQSTKKFTTLTGVIRQATNTVSRLYEYDATTLAETDIAVYDPDETLPQYRRSYLGNRCNANEDKPVTVMAKMRHINASTPNDYLIPPCADAIKLMVQAIRKEENDLLNEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGAGQNGGGLYQWF*
Ga0102532_11630194F088747AGGAMALGAAILGAAGISAAGSLLGGLFGGKKPKIPELKPIDFAGEQQKAIQQNIAAIEPATELAKRTTEAEQTQLEAQLRRAIPGYDQLVQQASKNIGASLRGELPSDVSSQVMRSAAGRALMGGYAGAGAGRALTARDL
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