NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102532_1138542

Scaffold Ga0102532_1138542


Overview

Basic Information
Taxon OID3300007094 Open in IMG/M
Scaffold IDGa0102532_1138542 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2005
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3991438Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002332Metagenome / Metatranscriptome569Y
F041153Metagenome / Metatranscriptome160Y
F079953Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0102532_11385421F041153AGGMGSSIIFNAKDHSYKSNDGSEIDWISVTTLVSHFKKPFDAKKIAEKVSKKKNSKWYGIDPKIIQEIWTNEADRSTTLGTWYH
Ga0102532_11385423F079953N/AMIPKKASSLYKEITKEFEVSEDLVETLVENYYKTLRKKLSSLSDLRINVDGLGHFVIKIQKVKKAIPHYEKVLKNHDTSTFGAYHNKKNVEDKLELLKEIHKKVEHELLKRKTFKDEKYSKINLAKPETDSGRDN*
Ga0102532_11385424F002332AGGMALVNQVQKRVRMPKWDIVKFQIFTHCYINRIAMSESDLDCLTLLSFNQPIELSNFCLDASSEEDWIFKSPQTVRNSVNKAEKNGLVIKDASNKKVIMLNPNIKVQTEGTILLDYKFLGNDTEESK*
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