Scaffold Ga0102532_1107664

Overview

Basic Information

• Taxon OID: 3300007094
• Scaffold ID: Ga0102532_1107664
• Source Dataset Name: Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1769
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3991438
  • Long. (^o): 103.77518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029089	Metagenome / Metatranscriptome	189	N
F035287	Metagenome / Metatranscriptome	172	N
F040000	Metagenome	162	N
F050316	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102532_11076643	F035287	N/A	MRPPPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNNLEHLIPVKDPYL*
Ga0102532_11076644	F040000	N/A	MTPDYTVDKEWANLNSMIKVREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFR*
Ga0102532_11076645	F050316	N/A	VADAYGMNQELVTIPKSDISKADIADIAANLIHRIEEGEVNPIAAHVRLKAVVKALEQVLKATEQTVWDEAEKNGKK*
Ga0102532_11076647	F029089	N/A	LSDLTDKLGLVPSYDDLTVATLKADFLKLVQKLPVDQQERYMKDIDQMTPARFEKGIKFIQDQLSKK*