Scaffold Ga0102532_1017019

Overview

Basic Information

• Taxon OID: 3300007094
• Scaffold ID: Ga0102532_1017019
• Source Dataset Name: Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25506
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3991438
  • Long. (^o): 103.77518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047663	Metagenome	149	N
F072295	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102532_101701915	F047663	AGGAGG	VSKQADIVDALVTSLDAVTWTATADPVTVESKNFPSYDIEDLADPVICITDGPIESERLSRSAHQRDYSVEIYLARHTPTEAACDEMLDLLEELLDKLEDHSWGAVSWPASVTSPQSIVVEKNPDEALVERNVWRAGIVVVYRVPRAH*
Ga0102532_101701918	F072295	AGGAGG	VAITLGRDGGAPTGHNGASGIISVTWTREAEAIDISHRGLATGSGISYKASTGGFITRSGQIECLDAKSVMTSLASAGTGFIVTSVAESQPLDGPVTFTLTVKQTS*