Scaffold Ga0102532_1013546

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102532_1013546

Scaffold Ga0102532_1013546

Overview

Basic Information
Taxon OID	3300007094 Open in IMG/M
Scaffold ID	Ga0102532_1013546 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Singapore Centre on Environmental Life Sciences Engineering
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24023
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (92.59%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.3991438	Long. (^o)	103.77518	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104646	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102532_101354612	F104646	AGGAG	MDSTTSLPNPLCEIGRTHPRDKHRMKPLDSHPGVWECPRHELFATIVEPDRAESLNRGEAFPMHDGSTGEVVRIGDERGGGIVVYYRSAG*

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