NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0101561_1017345

Scaffold Ga0101561_1017345


Overview

Basic Information
Taxon OID3300007092 Open in IMG/M
Scaffold IDGa0101561_1017345 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Dobu 'control', st7dc
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.752083Long. (o)150.854133Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059684Metagenome / Metatranscriptome133Y
F068499Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0101561_10173451F059684N/AGSQFTGSHQDVSVEGQKRAYTVHFTSYKAVARSRRQSRDRK*
Ga0101561_10173452F068499N/AEMYSIREFSAFYSHFQVTSGQMTSLPGHFRSPEVT*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.