Scaffold Ga0075110_1063188

Overview

Basic Information

• Taxon OID: 3300007074
• Scaffold ID: Ga0075110_1063188
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 840
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F096209	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075110_10631881	F000379	AGGAG	MYNKIDYDNKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKEDAITVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDVGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVAIESIREVLEMEKS*
Ga0075110_10631882	F096209	GGAG	MTIAIQTKSVQEIFEEMTESYTLGEYLDGHTNYGEDALMSADKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR*