Scaffold Ga0101554_1001266

Overview

Basic Information

• Taxon OID: 3300007049
• Scaffold ID: Ga0101554_1001266
• Source Dataset Name: Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', st32ic
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 2762
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Stylissa Sp. → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016820	Metagenome	244	Y
F037769	Metagenome	167	N
F088913	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101554_10012664	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEESNQLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLINATALTPKDYENDEDFHEALLHRLHIAEHFISINKYIDEHLDFAKAHIPPQAP*
Ga0101554_10012666	F016820	N/A	MTKKEFSYIVFSSCGDNVQEIHGVYKDLEGAAYGAKAALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQSQEVS*
Ga0101554_10012668	F088913	N/A	MTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRRGVIKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRIELENEVSKM*