NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080087_107271

Scaffold Ga0080087_107271


Overview

Basic Information
Taxon OID3300007022 Open in IMG/M
Scaffold IDGa0080087_107271 Open in IMG/M
Source Dataset NameNon-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Non-Marine Hypersaline Water Viral Communities From Mallorca 2014 (Spain)E1

Source Dataset Sampling Location
Location NameSalinas de Campos (Mallorca)
CoordinatesLat. (o)39.338015Long. (o)3.051796Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065465Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0080087_1072712F065465GGAMTEDITVVCECDVLDEARSMGYRRYADMPAADIVAAWPLEYTNHGSWDTHILPTLRCLAGYGDRGYGTYQQRQDVALIQDGDEADMPADAIILDSGHLLDDIIVSWQDGAHTAVTDTLRQSDSYSLEDIQR*

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