Scaffold Ga0079218_11962935

Overview

Basic Information

• Taxon OID: 3300007004
• Scaffold ID: Ga0079218_11962935
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 666
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018448	Metagenome	235	Y
F035953	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079218_119629351	F035953	AGGAG	MHRYRFSFLLLVVVATIASVSSRAQEVEDTIRIKTRVVFLDALVKDKKTNLPISNLTPENFEVLDDGKPRPISYFTREGQA
Ga0079218_119629352	F018448	N/A	HLGIPFLAKAGMKVARTAARIKGGTAKRIAEAGSIKLAVFENQAFDGEFTKFRSTLNAALNDTWMPLVQTLSATNEEQVYIFLREAGEKFNVLVITIAERDATVVQVTLSPKNLALLMRDPEGTGKAITEEATIIDQE*