Scaffold Ga0079218_10740991

Overview

Basic Information

• Taxon OID: 3300007004
• Scaffold ID: Ga0079218_10740991
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 931
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004218	Metagenome / Metatranscriptome	448	Y
F019902	Metagenome / Metatranscriptome	227	Y
F025220	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079218_107409911	F019902	GGAG	MRENVLRDLAGRAATEPTFLKQARSDLEGTLVRFGYDLTLEELRLVEGLRRQTAGMSVEQLARELARGLRGRTGSPPARPSAPSWRGAGPTRPARPGS*
Ga0079218_107409912	F004218	AGGA	VAKTFELDAMASPSSLLAKAKKAAYANGATVLGDENSGRFSHELAEGEYRMVGQRVIVTVTDKHWLLPWPVLEAQLREFVL*
Ga0079218_107409913	F025220	N/A	GAVGIALGILGYFLGARRLGAASVVLGTAEVFMAAASTGLIPGVTPPGHGYN*