Scaffold Ga0079218_10157408

Overview

Basic Information

• Taxon OID: 3300007004
• Scaffold ID: Ga0079218_10157408
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1669
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046874	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079218_101574082	F046874	GGA	MAAERSRKRQIAEQSRKQSHKRPIAEQSRKRQIADDNPREIRRVIAQMEESLRVLSGIAQRTRAKRLLISGAAVTGAALVAKRLASGSSGFDLGRLFERMPENAPPKLMFRNISAIRENTERILQLLESERTSAGPEPRRDPAL*