Scaffold Ga0102676_103021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102676_103021

Scaffold Ga0102676_103021

Overview

Basic Information
Taxon OID	3300006999 Open in IMG/M
Scaffold ID	Ga0102676_103021 Open in IMG/M
Source Dataset Name	Non-marine hypersaline water viral communities from A?ana, Logroño, Spain -Vir_A?ana_2_PRE
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1183
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Hypersaline Water → Non-Marine Hypersaline Water Viral Communities From Salinas De Anana, Spain

Source Dataset Sampling Location
Location Name	Añana
Coordinates	Lat. (^o)	42.80111387	Long. (^o)	-2.985507	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087432	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102676_1030211	F087432	AGGAGG	MVKYENSEYVPCDYKVIIQNRGQEEIHYTNSKIYWKDMVAKHDHLTNLSFEEITLTAEQNERLAEINEENIQQGFQAQVREYVENGNFPEGYNHPLSDLKQRKEKKQYDNELDNAYQMILENEGLI*

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