Scaffold Ga0098046_1099196

Overview

Basic Information

• Taxon OID: 3300006990
• Scaffold ID: Ga0098046_1099196
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 648
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024547	Metagenome / Metatranscriptome	205	Y
F075983	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098046_10991961	F024547	AGGA	MSITNHDYTRRNRFTGESIELTKEEAERHDKIFIDEALATIEDKD
Ga0098046_10991963	F075983	N/A	IMAQVSLIIAFHTSHLILSVLLLFLSVMMIFGGLPKYDL*