Scaffold Ga0098046_1003343

Overview

Basic Information

• Taxon OID: 3300006990
• Scaffold ID: Ga0098046_1003343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5070
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009991	Metagenome / Metatranscriptome	310	Y
F071273	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098046_10033431	F071273	N/A	SNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA*
Ga0098046_10033439	F009991	N/A	MHYKSITYQLNSLRLGLVHEDNIYGKPTVFIAMGSQSPNIKIHMEIIKKYNQQGINVIAIPFDNNGSEPGDDYEVVAHYENILGFKSYVTEKINSSHRFFNDFGEPTTDFTEYHFDNKTKFVRKV*