Scaffold Ga0098064_105423

Overview

Basic Information

• Taxon OID: 3300006988
• Scaffold ID: Ga0098064_105423
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023449	Metagenome	210	Y
F038274	Metagenome	166	Y
F070566	Metagenome / Metatranscriptome	123	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098064_1054231	F086173	N/A	MLYKDKFPCDPLLHFDSKDAGTIEWTWRTKPPEAIYWKTYKPKKRDIKILSRVTPEQRKKVTTELLRSIIQTEHPPTVKQAKVRTL*
Ga0098064_1054232	F038274	AGGAG	MANEYRLDKHNGEYVLVSADSSKPTIRLGTDDIEVAKARAKPHMNF*
Ga0098064_1054233	F070566	AGGAG	MPKLEFTEAYWNQATSIFEGVQVIESKEVGRTIKYYAFPSKEGVPIIVLHDDEEEILKDRKLHKRVIGEIINKVTEEL*
Ga0098064_1054238	F023449	AGAAGG	MKWKIDKNIKIPHSYYSRNSQYRELINSMEEGDSVGDLTQNQSTALAQLMRKNGIKAVSRKMTGSKADVNETVYRVWHDGPLETAEEQGKQRIGSPTNTVGITPGILQQAEAHEDKHNIVEDTREVFKIVNEELAEIKKKEKGK*