NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098064_101337

Scaffold Ga0098064_101337


Overview

Basic Information
Taxon OID3300006988 Open in IMG/M
Scaffold IDGa0098064_101337 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5353
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → unclassified Roseobacter → Roseobacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059353Metagenome / Metatranscriptome134N
F062676Metagenome / Metatranscriptome130N
F070005Metagenome123Y
F081425Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0098064_10133713F070005GGAGGMKKVVKKKHEPQRYRLDNISMREIKNKYPDKVIDAYAENGRLVIVLDTCRIKFDDRVKQQRGNKYGAVHTGKLVESS*
Ga0098064_10133714F062676N/AMKVKGKSVYNNENALEFAKSVRGQYIISQALVIASSVLEKYEVEEDITRAEPSNRLDMEYLLRAFPLYRIHEQTVWEDDNEKGG*
Ga0098064_1013375F081425AGGAGMKRTWETMYPTISGTEDKIKLLLVMKGYDRNEICFRGYASDRELRYGYWKHIKPKDIEYVETFSGVKFTPFSTEDEDCGDLITYPYKEIKNARPRHSAD*
Ga0098064_1013378F059353AGGAGMGKLTVADANELLDKGVITKETLADMQEKGLVSTRSKSAERYIQSSNGSWVTPIFYFRGLGDGKYTQEMTELRTKVNEVIEKYTITKHEVVNTETESKKSRKGKNGK*

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