Scaffold Ga0098064_101337

Overview

Basic Information

• Taxon OID: 3300006988
• Scaffold ID: Ga0098064_101337
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5353
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → unclassified Roseobacter → Roseobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059353	Metagenome / Metatranscriptome	134	N
F062676	Metagenome / Metatranscriptome	130	N
F070005	Metagenome	123	Y
F081425	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098064_10133713	F070005	GGAGG	MKKVVKKKHEPQRYRLDNISMREIKNKYPDKVIDAYAENGRLVIVLDTCRIKFDDRVKQQRGNKYGAVHTGKLVESS*
Ga0098064_10133714	F062676	N/A	MKVKGKSVYNNENALEFAKSVRGQYIISQALVIASSVLEKYEVEEDITRAEPSNRLDMEYLLRAFPLYRIHEQTVWEDDNEKGG*
Ga0098064_1013375	F081425	AGGAG	MKRTWETMYPTISGTEDKIKLLLVMKGYDRNEICFRGYASDRELRYGYWKHIKPKDIEYVETFSGVKFTPFSTEDEDCGDLITYPYKEIKNARPRHSAD*
Ga0098064_1013378	F059353	AGGAG	MGKLTVADANELLDKGVITKETLADMQEKGLVSTRSKSAERYIQSSNGSWVTPIFYFRGLGDGKYTQEMTELRTKVNEVIEKYTITKHEVVNTETESKKSRKGKNGK*