Scaffold Ga0102533_10753

Overview

Basic Information

• Taxon OID: 3300006957
• Scaffold ID: Ga0102533_10753
• Source Dataset Name: Freshwater lake microbial communities from Singapore - a non-axenic P13C2 culture
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9512
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic P13C2 Culture

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.376759
  • Long. (^o): 103.898487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082218	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102533_1075310	F082218	N/A	MSGTLPLREAALAAIAERIITGLPDVALDRARRAPVDVEAETLPRLVLRGEEIEADDTEEPGRTHYRIGFVVSGFAAAASDLAAEQALSTLHARLVSLLAGWTPAAPGLGDVVEQGAEFRMYDTEESALPAGEFLARFSILAIGPNGGPWSA*