Scaffold Ga0079219_10294147

Overview

Basic Information

• Taxon OID: 3300006954
• Scaffold ID: Ga0079219_10294147
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000859	Metagenome / Metatranscriptome	858	Y
F005719	Metagenome / Metatranscriptome	392	Y
F007338	Metagenome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079219_102941471	F000859	GGAG	MPREEIRSARSTGPTGSEFFNAVQEMSRDWMGRATAEVELGLKLSKKLTAAHSVPDAITAYQEWLSEEMNARAEDARLLMSNGQKIMDASSRLLSSSWTRGSMST*
Ga0079219_102941472	F005719	N/A	MTLDLTRDEIWFLQALRAAGERGRIVSAFASNTRLARLVEVQYVTKQPQSERKSLYVITDRGRQALENAPQ*
Ga0079219_102941473	F007338	N/A	SRFQDWTANVAEPKVRLHGRFRPISEVCEEVANLSNLLPDDVFALKLDETYRGAGRHLLRLIQIGKTKFSGGGY*