Scaffold Ga0079219_10122721

Overview

Basic Information

• Taxon OID: 3300006954
• Scaffold ID: Ga0079219_10122721
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1328
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006905	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079219_101227211	F006905	N/A	INALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMQKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRQPGGPTT*
Ga0079219_101227213	F002850	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVQQNSEQLEQIRLWQQRIDAEASEFSGIAGRFADLLENDLPRMEEHLVAIIASLEAARRVRAPVSGP*
Ga0079219_101227214	F004352	N/A	MTARPEQDGDRQLRLLGDAWDKAAEHWRDGPARQFGNGQLTPLLQESRAYLEALRKLMDTLEAADRETEG*