Scaffold Ga0075444_10226300

Overview

Basic Information

• Taxon OID: 3300006947
• Scaffold ID: Ga0075444_10226300
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 745
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072524	Metagenome	121	Y
F080517	Metagenome	115	N
F094529	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075444_102263001	F072524	N/A	TGGCMSIKMSVNGKAMEYFTIKVNHGFGVEDLAYLVMGWENKFSKIKAIKSYSKILTIAKKQLMDKGLIWLEFPEDSLNYDFEEGVSDIHKKVMAHIRDLEPTKYIGKTTAEIKQIQSEVA*
Ga0075444_102263002	F080517	GGAGG	MTIVHTKNSSIGYDTVNKCVAPVRTAENTSYETMIKICIDKLIKGDEIEKYKSALINMAQMMDKENI*
Ga0075444_102263003	F094529	N/A	MRNQIDQKSLYVERSGDKEIYYSYNTTVAIRTPLETYVSENVWSVTTAKHL