Scaffold Ga0075444_10139952

Overview

Basic Information

• Taxon OID: 3300006947
• Scaffold ID: Ga0075444_10139952
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F031252	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075444_101399521	F031252	AGGA	MKTFKGYLTEFVIQSTSDYVFDTLSSNTSDLKIPISGPMFKRIWPDTIRATV
Ga0075444_101399522	F001930	N/A	FDFGQISYMQIPLTSSTMEWIFQVQIPRATVFHVTNGIGLGKLKRLQNKKKSISAFFNMDASTMESGIQGGGGVVVELDANIIMSSKGDLMSMPDKTGRRWVELYNIDPKEKMHKELEKMLIDLAIKHDPKNKEYLETVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGVVHGYYVRRGAVAVKHPSGRMVGGDSAIKEWNVYDEQIVDKIKILKVHTFNTTTRETDWLAKSVIPRLGKIPHRHWVGGATELSTYVSQVAEAEVRSIGRSKP*