Scaffold Ga0075444_10120545

Overview

Basic Information

• Taxon OID: 3300006947
• Scaffold ID: Ga0075444_10120545
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C338 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032041	Metagenome	181	Y
F043615	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075444_101205452	F043615	AGGAG	MMAEQVYGERTRWEHRYSEFEVGSLVRQRNGTWRITISRVCGGNNCGPRNGFAHDHRSTNTMTEQEAVNLLLDWDHDLEEAKGLANYV*
Ga0075444_101205453	F032041	GGAGG	METKLTYTVEAINRPYGAQHSIPWGDAVRTEGLTERKAIKTYNSINRWYHPQGGDGYSGHVRIVGSDDWTYTVEPPAPGERATLQAMYHLDDL*