Scaffold Ga0075444_10035586

Overview

Basic Information

• Taxon OID: 3300006947
• Scaffold ID: Ga0075444_10035586
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2450
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020442	Metagenome	224	Y
F030889	Metagenome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075444_100355862	F020442	AGGAG	MSDVKKSAIAKLAKMGLTEEEVLSLFDDGEETIVVEDGESSDSGESKSWQQLVMEEHVGYYNKRYDTSLTFDEYYEGVTTGKIEVHYNWKQMLGLEKQPTIPVSENVNEEKFKNHGNRS*
Ga0075444_100355866	F030889	N/A	ICRYALTYSDRPGIVIIMRVNKERDIDMYVIMENAEIISTNLDANEIFEEALGMERTGRRVAIVKMDPAKFDAAMKKMLMSDEYWVRRTERKRAA*