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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006947 Open in IMG/M |
| Scaffold ID | Ga0075444_10031205 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2659 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
| Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005315 | Metagenome | 405 | Y |
| F039351 | Metagenome | 164 | N |
| F060351 | Metagenome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075444_100312051 | F060351 | N/A | KYDDMVWKILGGMPIEVFDEDDDTVWENETWELVTVRSEGDYKDSRAIGSANLITALNMIHQRLLVDGTVSDDITALSHEIFNNILETFTEDKLIRKRPENIRKTFQLIN* |
| Ga0075444_100312053 | F039351 | AGAAG | MTASYKIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLNCLMTHEMGFDFVIYVKTCATRDFKHLTAENHPEAYNTTDLFEKIKLVKEMEYNILERYKHKLCLIGGIEKIEPDFDCAFKISSITEFFYPDFKDTTIFGDYTHFEKYSDGDKKGAMKLWSIFEHKHNFWKEHPEYFASATDQVHPNRKATKALAEFIHEQLR* |
| Ga0075444_100312054 | F005315 | N/A | MFIIACGDSYTQGEGLEKQTQAYPYLLSGNITNSAQSGASEYLITTQIEEAVKLKPDLIVVGHTSEYRWEVWDARNKCQQGFIVANHIMRNEKYYRNWILSEQILGNTRNIKEHKAAWHAAGMLYFSEQQLVQRLWSGAVSKQILLAQRANIPMIHHCCFPHLQPLLEELTDDYVEFYLDLEKHKDMAPDNSHAGAKSHKKLAKLLMDKFS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |