Scaffold Ga0099822_1058064

Overview

Basic Information

• Taxon OID: 3300006943
• Scaffold ID: Ga0099822_1058064
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1359
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000029	Metagenome	5053	Y
F002973	Metagenome	516	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099822_10580641	F002973	N/A	KDDGKGSRETRCLIEGHPCLVAFIYESDNNVVSQRLVEKFHLPTRFHPNQARIKFSTGQCVKEVLCDIAPTNSCYLLL*
Ga0099822_10580643	F000029	GGAG	MLPSSFHPNQARIKFSRGQCVKEVLCDIAPMNYCHLLLRWAWLHFKTLNLDERSLYLRQLGHEMKLKFVTLRQASKDQHKLKEKIEKERIEKEEI*
Ga0099822_10580644	F000029	N/A	VEKLKLPISFHPNQARIKFSTGQFVKEILCDIAPMNSCHLLLRWASIHFKTLNHDERSLYLRQLGHDMKLKFVAPKQASKDQHRLKEKIEKEEI*