Scaffold Ga0099822_1007982

Overview

Basic Information

• Taxon OID: 3300006943
• Scaffold ID: Ga0099822_1007982
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13590
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055472	Metagenome	138	Y
F079668	Metagenome	115	Y
F093368	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099822_100798214	F055472	GAGG	VARVVWKASVVRSRGVTGSRGIIISTDEAAKVTSTNQFFYFILECFVVFRSVTVVAVVAAVFDHISIRGSGCLAWWRNEVNL*
Ga0099822_100798217	F079668	AGAAGG	LWDATRGSTLGKSTTDQAKRSVLLTRIGVMMARSSEFKPVPKLMEWPFGSSRGVVSSTSSRQTSRPTLGSRSSPDRAMPEPDGRSIWLVCWIGSCGRRLAM*
Ga0099822_100798226	F093368	GGAG	VISREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHTIIDIEGIFL*