Scaffold Ga0098036_1121649

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1121649
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 800
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060343	Metagenome	133	Y
F081211	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_11216492	F081211	N/A	MNKNLSLIATLVPLVIVAIGLVGWVLSLRSDVTATVGQLEAVQAEVEDAQFRLNELEKSLAIADDQMNTIMGEHEVIGEMFEQIGEIQPAGERRTYGGYN*
Ga0098036_11216493	F060343	N/A	GRIYLRAMARIDGETLTTYRDPSAEPHSEVEGERRESTHNRLCYRRQSQEWRLRDERMDWNHPEALKFTKDYVGDLNAEWHMADSVAHIYHNGYAIIDENDVAHLYE*