Scaffold Ga0098036_1085641

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1085641
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 970
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007978	Metagenome / Metatranscriptome	341	Y
F008820	Metagenome / Metatranscriptome	327	Y
F054099	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_10856411	F054099	AGAAGG	MLAHPETYEDAQYQNYRPIGEQPPIPPGVHDIELSWDRSRGYMRIIIDGTHSWWFKEYLGKAQVLSCDNKKGRLNLRAMAQINGETLTMWR
Ga0098036_10856412	F008820	AGGAGG	MADLTQYLTQKYTKMVAEISADLGKTADDLANAQNIIRALKNPDMMVNGESLTLDMVQIMENGDIRLLPPKPAPITDRCVQEPQKNGKKTEKELADVSAS*
Ga0098036_10856413	F007978	AGGAGG	MAITFNTDQIDGLIGTTITGVYARIQRVTVMKYDAETNPNIAVNWKCLYDVILHNSASTRNADGEYPEWGNRLRSRRIDHLKGDYDPTSNANPYAQAYSDLKAKLAAGGSPIATSIADA*