Scaffold Ga0098036_1040194

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1040194
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1459
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F034953	Metagenome / Metatranscriptome	173	N
F046426	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_10401941	F034953	N/A	VEKDTPVIITWKDAVDHPDEVTVETLEIKEVHYDTIGFFLSFKDDYVILAYNKEDDNKTYKGTAMIPCSLITDIRRLTDGYDE*
Ga0098036_10401943	F002078	AGGAG	MEMFMNQAWFQIAGEVVLVFTAITGSLPDRWVQKIPILGTMWPIFNWLAGNIFNNINHPKGMAARVEVEKEIDEAKAKVRDRVGMPDVLDGM*
Ga0098036_10401944	F046426	GGAG	MKLKLRLGIVLVCLTFWTGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCETKKSPIDKVEDKVRRLSDE*