Scaffold Ga0098036_1031366

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1031366
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1669
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040579	Metagenome	161	N
F058923	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_10313664	F058923	AGGA	MSITFVYRDENNKVQVKRIEYEEVKKDLFKYLSHDIRSIIKEKENERLDKT*
Ga0098036_10313666	F040579	AGAAGG	MTDKQLERKANDLMILFFEFLELKELEKFTDHDANLTESGEYLLAVIKKWLKDNVVQVEWEAERSSIWTPWTK*